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varfreq_context: add a check to see if CG is in ALT C/C++ CI #450: Commit fa9cf51 pushed by imsuneth
1h 21m 56s dev
dev
1h 21m 56s
varfreq_context: min_window fix C/C++ CI #449: Commit 38f68f3 pushed by imsuneth
1h 49m 27s dev
dev
1h 49m 27s
varfreq_context script minor change C/C++ CI #448: Commit 9d2f06d pushed by imsuneth
2h 26m 9s dev
dev
2h 26m 9s
varfreq_context: match window length to variant length C/C++ CI #447: Commit e68d934 pushed by imsuneth
1h 37m 28s dev
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1h 37m 28s
add varfreq_mean script C/C++ CI #446: Commit fc67868 pushed by imsuneth
2h 12m 10s dev
dev
2h 12m 10s
skip non-derivahble ALT due to breakends C/C++ CI #445: Commit 125ddcf pushed by imsuneth
2h 22m 29s dev
dev
2h 22m 29s
update varfreq context script C/C++ CI #444: Commit 2c0c5b3 pushed by imsuneth
2h 34m 22s dev
dev
2h 34m 22s
context script: add meth_pct_diff column C/C++ CI #443: Commit f9a0c56 pushed by imsuneth
51m 37s dev
dev
51m 37s
context script: simplify var and bg comparison C/C++ CI #442: Commit 4e80f9e pushed by imsuneth
2h 16m 12s dev
dev
2h 16m 12s
context scritp: consider bg_right from end of variant C/C++ CI #441: Commit 4da7e6c pushed by imsuneth
1h 41m 24s dev
dev
1h 41m 24s
minor change in context script C/C++ CI #440: Commit fa4ba52 pushed by imsuneth
2h 13m 42s dev
dev
2h 13m 42s
update varfreq_context script C/C++ CI #439: Commit 3e57226 pushed by imsuneth
2h 37m 28s dev
dev
2h 37m 28s
check either left or right bg is methylated C/C++ CI #438: Commit b6e3dec pushed by imsuneth
2h 33m 16s dev
dev
2h 33m 16s
update varfreq summary script C/C++ CI #437: Commit 4dd2971 pushed by imsuneth
1h 33m 17s dev
dev
1h 33m 17s
fix varfreq summary C/C++ CI #436: Commit e799511 pushed by imsuneth
1h 17m 5s dev
dev
1h 17m 5s
add ignored counts to context summary C/C++ CI #435: Commit 215ffc5 pushed by imsuneth
2h 30m 48s dev
dev
2h 30m 48s
update context script C/C++ CI #434: Commit 459870d pushed by imsuneth
2h 14m 16s dev
dev
2h 14m 16s
add seperate regions thresolds C/C++ CI #433: Commit dbcf243 pushed by imsuneth
1h 17m 32s dev
dev
1h 17m 32s
test scripts support compressed inputs C/C++ CI #432: Commit 77802c7 pushed by imsuneth
2h 28m 4s dev
dev
2h 28m 4s
varfreq summary and context test scripts with required test files C/C++ CI #431: Commit 30b44a3 pushed by imsuneth
2h 11m 25s dev
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2h 11m 25s
keep Node 20 on old Ubuntu containers C/C++ CI #430: Commit d90ea34 pushed by imsuneth
2h 13m 40s dev
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2h 13m 40s
fix varmod: tag CpG entries with strand C/C++ CI #429: Commit 2178567 pushed by imsuneth
2h 20m 26s dev
dev
2h 20m 26s
count and warn imprecise variant C/C++ CI #428: Commit 4c693f2 pushed by imsuneth
2h 38m 3s dev
dev
2h 38m 3s
preserve original chrom/POS in region fixtures C/C++ CI #427: Commit d4e7d1d pushed by imsuneth
2h 17m 56s dev
dev
2h 17m 56s
fix osx 14 test failure C/C++ CI #426: Commit 5ef9312 pushed by imsuneth
2h 28m 37s dev
dev
2h 28m 37s