LNT: Update pre-commit pins and reformat

.flake8

@@ -1,15 +1,6 @@
 [flake8]
 max_line_length = 88
 ignore =
-    # line too long - let black handle that
-    E501
-    # Unnecessary dict/list/tuple call - rewrite as a literal
-    C408
-    # whitespace before ':' - doesn't work well with black
-    E203
-    # missing whitespace around operator - let black worry about that
-    E225
-    # line break occurred before a binary operator - let black worry about that
-    W503
-    # line break occurred adter a binary operator - let black worry about that
-    W504
+    # code formatting - let black handle that
+    E
+    W

.pre-commit-config.yaml

@@ -3,26 +3,26 @@ default_language_version:
 
 repos:
     -   repo: https://github.com/pre-commit/pre-commit-hooks
-        rev: v4.5.0
+        rev: v6.0.0
         hooks:
         -   id: check-yaml
         -   id: end-of-file-fixer
         -   id: trailing-whitespace
     -   repo: https://github.com/psf/black-pre-commit-mirror
-        rev: 23.12.1
+        rev: 26.10.1
         hooks:
         -   id: black
     - repo: https://github.com/pycqa/isort
-      rev: 5.13.2
+      rev: 9.0.2
       hooks:
       - id: isort
         args: [rioxarray/, test/, docs/]
     -   repo: https://github.com/asottile/blacken-docs
-        rev: 1.16.0
+        rev: 1.20.0
         hooks:
         -   id: blacken-docs
             args: [--skip-errors]
     -   repo: https://github.com/pycqa/flake8
-        rev: 6.1.0
+        rev: 7.4.1
         hooks:
         -   id: flake8

rioxarray/__init__.py

@@ -1,4 +1,5 @@
 """Top-level package for rioxarray."""
+
 __author__ = """rioxarray Contributors"""
 import importlib.metadata
 

rioxarray/_convention/cf.py

@@ -4,6 +4,7 @@
 This module provides functions for reading and writing geospatial metadata according to
 the CF conventions: https://github.com/cf-convention/cf-conventions
 """
+
 from typing import Optional, Tuple, Union
 
 import numpy

rioxarray/_convention/zarr.py

@@ -5,6 +5,7 @@
 - Zarr spatial convention: https://github.com/zarr-conventions/spatial
 - Zarr geo-proj convention: https://github.com/zarr-conventions/geo-proj
 """
+
 from typing import Optional, Union
 
 import rasterio.crs

rioxarray/_io.py

@@ -5,6 +5,7 @@
 This file was adopted from: https://github.com/pydata/xarray # noqa
 Source file: https://github.com/pydata/xarray/blob/1d7bcbdc75b6d556c04e2c7d7a042e4379e15303/xarray/backends/rasterio_.py # noqa
 """
+
 # pylint: disable=too-many-lines
 import contextlib
 import importlib.metadata

rioxarray/_options.py

@@ -6,6 +6,7 @@
 This file was adopted from: https://github.com/pydata/xarray # noqa
 Source file: https://github.com/pydata/xarray/blob/2ab0666c1fcc493b1e0ebc7db14500c427f8804e/xarray/core/options.py  # noqa
 """
+
 from typing import Any, Optional
 
 from rioxarray.enum import Convention

rioxarray/_show_versions.py

@@ -4,6 +4,7 @@
 adapted from :func:`sklearn.utils._show_versions`
 which was adapted from :func:`pandas.show_versions`
 """
+
 # pylint: disable=import-outside-toplevel
 import importlib.metadata
 import os

rioxarray/_spatial_utils.py

@@ -1,6 +1,7 @@
 """
 Helper functions for determining spatial attributes.
 """
+
 import copy
 import math
 import warnings

rioxarray/crs.py

@@ -1,6 +1,7 @@
 """
 This module contains helper methods for rasterio.crs.CRS.
 """
+
 from typing import Any
 
 import rasterio

rioxarray/enum.py

@@ -1,4 +1,5 @@
 """Enums for rioxarray."""
+
 from enum import Enum
 
 

rioxarray/raster_array.py

@@ -60,9 +60,9 @@ def __init__(self, xarray_obj: xarray.DataArray):
         self._obj: xarray.DataArray
         # properties
         self._nodata: Optional[float] = None
-        self._manager: Optional[
-            FileManager
-        ] = None  # https://github.com/vylor/rioxarray/issues/254
+        self._manager: Optional[FileManager] = (
+            None  # https://github.com/vylor/rioxarray/issues/254
+        )
 
     def set_nodata(
         self, input_nodata: Optional[float], *, inplace: bool = True

rioxarray/raster_writer.py

@@ -8,6 +8,7 @@
 - https://github.com/dymaxionlabs/dask-rasterio/blob/8dd7fdece7ad094a41908c0ae6b4fe6ca49cf5e1/dask_rasterio/write.py  # noqa: E501
 
 """
+
 import numpy
 import rasterio
 import xarray

rioxarray/xarray_plugin.py

@@ -2,6 +2,7 @@
 This module allows for open_rasterio to be used with the xarray open methods
 through a backend entrypoint.
 """
+
 # pylint: disable=arguments-differ
 import os.path
 

test/integration/test_integration__io_uri_manager.py

@@ -1,6 +1,7 @@
 """
 Tests based on: https://github.com/pydata/xarray/blob/071da2a900702d65c47d265192bc7e424bb57932/xarray/tests/test_backends_file_manager.py
 """
+
 import concurrent.futures
 import gc
 import pickle
@@ -32,7 +33,6 @@ def test_uri_manager_mock_write__threaded():
     manager = URIManager(opener, "filename")
 
     def write(iter):
-        nonlocal manager
         fh = manager.acquire()
         fh.write("contents")
         manager._local.thread_manager = None

test/integration/test_integration_rioxarray.py

@@ -3367,9 +3367,10 @@ def test_non_rectilinear__reproject(rename, open_rasterio):
 def test_to_rasterio_dataset():
     in_rpc_path = os.path.join(TEST_INPUT_DATA_DIR, "cog.tif")
     in_rpc = rioxarray.open_rasterio(in_rpc_path)
-    with in_rpc.rio.to_rasterio_dataset() as riox_ds, rasterio.open(
-        in_rpc_path
-    ) as rio_ds:
+    with (
+        in_rpc.rio.to_rasterio_dataset() as riox_ds,
+        rasterio.open(in_rpc_path) as rio_ds,
+    ):
         # object type
         assert isinstance(riox_ds, DatasetReader), "Error in object type"
 
@@ -3395,9 +3396,10 @@ def test_to_rasterio_dataset():
 def test_to_rasterio_dataset_rpcs():
     in_rpc_path = os.path.join(TEST_INPUT_DATA_DIR, "test_rpcs.tif")
     in_rpc = rioxarray.open_rasterio(in_rpc_path)
-    with in_rpc.rio.to_rasterio_dataset() as riox_ds, rasterio.open(
-        in_rpc_path
-    ) as rio_ds:
+    with (
+        in_rpc.rio.to_rasterio_dataset() as riox_ds,
+        rasterio.open(in_rpc_path) as rio_ds,
+    ):
         # object type
         assert isinstance(riox_ds, DatasetReader), "Error in object type"
 

test/integration/test_integration_zarr_conventions.py

@@ -1,4 +1,5 @@
 """Integration tests for reading Zarr conventions."""
+
 import numpy as np
 import pyproj
 import xarray as xr

test/unit/test_convention_cf.py

@@ -1,4 +1,5 @@
 """Unit tests for the CF convention module."""
+
 import numpy
 import xarray
 from affine import Affine

test/unit/test_convention_zarr.py

@@ -1,4 +1,5 @@
 """Unit tests for the Zarr convention module."""
+
 import numpy as np
 import xarray as xr
 from affine import Affine