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1. virt_knock virt_knock Public

   CUDA-native single-cell virtual gene knockout. Reimplements scTenifoldKnk with GPU-accelerated randomized SVD and Laplacian eigenmaps, delivering ~7× faster PC network construction than CPU MKL. En…

   Python 2

2. zotero-doi-metadata-fill zotero-doi-metadata-fill Public

   Fill missing Zotero item metadata (authors, journal, year, pages, ISSN, abstract) via DOI — single item or whole library, fill-in-missing only, never overwrites.

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3. image_dedup image_dedup Public

   科研图片查重工具，自动检测论文图片中的完全复制、旋转/翻转、亮度调整、缩放裁剪、边缘拼接、内部区域复制粘贴等学术不端行为。支持 pHash/dHash/SSIM/直方图等多种算法，一键生成 HTML 可视化报告。

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4. virt_overexpression virt_overexpression Public

   GPU-accelerated single-cell virtual gene overexpression. CUDA-native implementation modeling 2-fold (configurable) gene overexpression via scTenifold GRN perturbation. The OE companion to virt_knoc…

   Python 1

5. mq2pdv mq2pdv Public

   Bridge MaxQuant 2.7+ DIA (MaxDIA) search results to PDV spectrum visualization. 将 MaxQuant DIA 搜库结果桥接至 PDV 谱图可视化 - converts evidence.txt to PDV-compatible pepXML + MGF, enabling annotated b/y ion s…

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6. SoluEval SoluEval Public

   Rapid E. coli protein solubility prescreening across His/GST/MBP/SUMO tags. NetSolP engine + zero-dependency eSOL-calibrated heuristic. Benchmarked on 2,665 proteins (eSOL/cbh21/yeast). GUI + CLI +…

   Python