Ultrafast identification of signature sequences in microbial genomes
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Sep 13, 2026 - Python
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wastewater-surveillance
Here are 23 public repositories matching this topic...
8,185 wastewater catchment areas in Great Britain covering more than 99% of the population.
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Aug 9, 2026 - Makefile
A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.
bioinformatics pipeline genomics nextflow public-health irma variant-calling influenza illumina oxford-nanopore viral-genomics snpeff nf-core freyja rsv nextclade wastewater-surveillance wastewater-genomics respiratory-viruses iterative-assembly
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Jun 9, 2026 - Nextflow
WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.
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Sep 8, 2026 - Rust
Reference-free, privacy-preserving wastewater pathogen surveillance for federated hospital networks. DNABERT-2 embeddings + Transformer-encoder VAE detect emerging anomaly clusters in unclassified reads. AIxBio Hackathon Track 2, Apart Research.
bioinformatics deep-learning metagenomics public-health anomaly-detection variational-autoencoder hackathon-project federated-learning pathogen-detection biosecurity wastewater-surveillance pandemic-preparedness dnabert aixbio
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Apr 29, 2026 - Jupyter Notebook
Fitness estimates of SARS-CoV-2 variants
epidemiology forecasting-models fitness-landscape virology statistical-modeling sars-cov-2 wastewater-surveillance wastewater-based-epidemiology
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Jun 1, 2026 - Python
A stochastic epidemiological model that supplements the conventional reported cases with pooled samples from wastewater for assessing the overall SARS-CoV-2 burden at the community level.
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Feb 21, 2024 - R
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Jun 20, 2023 - R
Challenges in WBE research article
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Oct 24, 2022 - R
Koronan jätevesiseurannan aineiston historia eli THL:n jätevesiraporttien taulukot julkaisupäivittäin. (The release history of open COVID wastewater surveillance data in Finland.)
finland open-data wastewater thl covid-19 covid sars-cov-2 covid-data koronavirus korona wastewater-surveillance
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Jun 12, 2026
PULSE is a comprehensive public health analytics platform that aggregates, visualizes, and analyzes data from multiple authoritative health data sources — including disease.sh (COVID-19 global statistics), OpenFDA (adverse drug events), and CDC NWSS (wastewater surveillance). Built with React and Recharts, PULSE provides real-time dashboards🦠🏥🩺.
react etl fda data-visualization public-health recharts epidemiology adverse-events data-pipelines cdc health-data data-export api-integration health-analytics openfda covid-19 disease-sh wastewater-surveillance real-time-dashboard
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Mar 6, 2026 - JavaScript
Forecast the official CDC national COVID-19 wastewater activity
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Aug 9, 2026 - CSS
Easy to view version of RKI SARS-CoV-2 wastewater surveillance reports
sars-cov-2 robert-koch-institut wastewater-surveillance sars-cov-2-variants public-health-surveillance
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Sep 11, 2026 - HTML
Analysis of whether seasonal SARS-CoV-2 wastewater activity can predict periods of elevated viral prevalence.
python data-science data-visualization public-health covid-19 sars-cov-2 juypter-notebook wastewater-surveillance
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Jul 13, 2026 - Jupyter Notebook
Containerized data retrieval from the Ontario Wastewater Surveillance Initiative (WSI) Data and Visualization Hub
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Jun 27, 2024 - R
Surveillance of wastewater for SARS-CoV-2 detection
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Nov 24, 2023 - R
MF1 Bioinformatics and Translational Research website
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Jul 9, 2026 - HTML
Reproducible code for multipathogen wastewater evidence ranking and governed review-queue analyses
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Jul 22, 2026 - Python
R Notebook with Swiss covid waste water analysis cuves for different cities
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May 9, 2023 - R
Genetic Algorithm-Optimized SEIR-V Model for Wastewater Epidemiology
python reproducible-research genetic-algorithm epidemiology covid-19 seir-model wastewater-surveillance
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Aug 6, 2026 - Jupyter Notebook
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