tree-of-life

DeepTime Mammalia：交互式哺乳纲演化树，3D 螺旋序幕 + D3.js 动态时间树，跨越 2 亿年 | Interactive mammalian phylogeny with 3D spiral intro & D3.js dynamic timetree spanning 200 Myr

A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier

🐚 Collect and classify species of organisms.

Implementation of "Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution" [ECCV 2024]

An interactive, open-source encyclopedia of the Thoth Tarot, with the Tree of Life and astrology cross-linked. Live at toth.jakub.computer

Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.

Generates images of the Tree of Life.

Code accompanying Somatic and germline mutational processes across the Tree of Life manuscript

雾岸六卷 · Mist Shore — 生命之树同观体验（React/Vite/四语）。序卷同观 + 六卷留痕 + 归树整象；非测评，不贴型。

Centralized resource to describe and link out to all components of the BioCLIP project (Code, Models, Datasets, Spaces).

V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.

Pick any species; see where their lineages meet, in deep time. An interactive tree-of-life visualiser, with the fossil record along every branch.

Album 57 - New Jerusalem Shines

MNHN-Tree-Tools a software for phylogenetic inference of millions of sequences

生命之树 · 生物进化知识图谱 | Interactive tree-of-life evolution atlas (Darwin cover + Obsidian-style graph), wired to Wikipedia/EOL/GBIF

Pipeline for constructionof phylogenetic trees from all domains

My PhD thesis

Album 80 - Voice of Wisdom: Songs from the Proverbs

A high-performance C# Windows Forms application for visualizing the Tree of Life. This project demonstrates how to handle and render large hierarchical datasets (36,000+ nodes) efficiently by implementing a Quadtree for spatial indexing and custom radial layout algorithms.

Explore how much of the eukaryotic tree of life has been sequenced: genome assemblies, annotations, and RNA-Seq coverage for any taxon, and where the biggest data gaps are.