AllenNeuralDynamics / segmentation-skeleton-metrics Star 10 Code Issues Pull requests A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics. skeletons neuron-segmentation connectomes segmentation-metrics flood-filling-network topological-merics Updated Jul 12, 2026 Python
RubenHaisma / segauge Star 1 Code Issues Pull requests Geometrically-correct, DICOM-native evaluation metrics for medical image segmentation in Python: Dice, IoU, HD95, ASSD, Normalized Surface Dice, per-lesion detection F1, with bootstrap confidence intervals and subgroup/fairness slicing. python dice metrics evaluation dicom medical-imaging segmentation image-segmentation nifti radiology medical-image-analysis hausdorff-distance rtstruct dicom-seg monai nnunet segmentation-metrics hd95 surface-distance surface-dice Updated Jun 20, 2026 Python
plasma-blue / mikan-rs Star 1 Code Issues Pull requests A medical image kit for segmentation metrics evaluation python dice rust metrics image-processing dicom medical mri medical-imaging simpleitk 3d nibabel hausdorff-distance medpy masd assd segmentation-metrics Updated Mar 5, 2025 Rust