[Comms Bio 2023] Official Code for Fast Detection of Slender Bodies in High Density Microoscopy Data
ManifoldEM Python suite
Simulation of cryo-EM ensemble data from atomic models of molecules exhibiting continuous motions
investigating some dynamics of spiking neural networks
Software implementation for paper Heuristic Analysis of Manifolds from Simulated Cryo-EM Ensemble Data
Path of least action analysis on energy landscapes
A Head-less Python Tool for Automated Cell Counting in Cropped Hemocytometer Frames
Analyzing the statistical differences and frequency of the genotype of cancer-risk SNPs between different human populations.
Automated 3D morphometric pipeline to quantify nuclear hypertrophy in Cdh2-deficient zebrafish embryos using Python and Streamlit.
UChicago Molecules to Organisms Fundamentals Sequence R Code: Ecology, Quantitative Bio, Genetics, Physiology, Developmental Bio
Automated kinetics analysis of DNA repair protein recruitment at laser-induced damage sites from timelapse fluorescence microscopy
Work in the domain of Quantitative Biology
Quantitative and evolutionary analysis of motility and phototaxis in Chlamydomonas reinhardtii using Python and Jupyter. Includes data cleaning, visualization, and statistical testing across mutation accumulation (MA) and natural isolate (NI) strains.
Quantitative analysis of single-cell CAR-T and TIL killing kinetics from microwell co-culture imaging: EM mixture models for per-well kill rate, predator-prey ODE fits, and single-effector-cell statistics
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