pseudobulk

Here are 5 public repositories matching this topic...

pseudobulking on an AnnData object

differential-expression scanpy anndata pseudobulk

Snakemake pipeline for scATAC-seq pseudobulk replicate creation

bioinformatics snakemake pipeline genomics genetics biology epigenetics cells atac-seq bam single-cell molecular-biology scatac-seq pseudobulk sinto

Archived version – superseded by updated dual implementation repository.

bioinformatics deseq2 scrna-seq immunology single-cell t-cells pbmc pseudobulk

Pseudobulk and metacell aggregation for single-cell RNA-seq (AnnData/scanpy + Seurat/R)

bioinformatics single-cell seurat scanpy pseudobulk metacells

Scripts and data for used in the TE Aging Manuscript

scrna-seq aging retrotransposons pseudobulk

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