Memory-efficient single-cell analysis in Python. Stream RNA, ATAC, CITE-seq and multi-omics from local or remote Zarr stores, from laptop to atlas scale, with reusable fingerprinted results.
Adding support for provenance and uncertainty management to PostgreSQL databases
Persist is a JupyterLab extension to enable persistent interactive visualizations in JupyterLab notebooks.
Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
Efficiently design and manage flexible workflows with AiiDA, featuring an interactive GUI, checkpoints, provenance tracking, and remote execution capabilities.
Agentic SWMM is an automated, auditable, and memory-informed framework for reproducible stormwater modelling, integrating QGIS and EPA SWMM through the aiswmm runtime, reusable Skills, and MCP interfaces, with QA verification, provenance tracking, calibration support, and Codex, Hermes, Claude code as well as OpenClaw compatibility
A Library of UI Control Elements to Track and Dynamically Overlay Analytic Provenance
Build provenance-aware higher-order knowledge graphs and native hypergraphs from documents, with validation, semantic search, and offline visualization.
Authorization, delegation, provenance, and verifiable-audit engine for AI agents. MCP adapter published.
Backend with the purpose of capturing data provenance and metadata of a preprocessing Pipeline
Linked frozen computations
Maintain an electronic lab book for computational research
Automated matching between online art auctions and archives of lost artworks.
A reasoning harness for human-AI collaboration. Preserves what's understood, not just what's said. Open-source skill for Claude Projects. Patent pending.
Open Meet Sum is an AI assistant for physical meetings that automatically transcribes, summarizes, and analyses audio with human-in-the-loop collaboration. It's a self-hosted solution, supporting both local, model API endpoints and built-in transcription engines.
Rust Graph Tracker: numeric and date provenance tracking with expression evaluation and derivation verification for LLM coding agents
The PRovenance Infomation in MAterials Science (PRIMA) Ontology
Persistent semantic state engine for AI agents — knowledge graphs, dynamic RAG, semantic zoom, bidirectional natural language translation, provenance tracking, self-extending graph.
Framework for Reproducible Biomolecular Data Acquisition and Dataset Construction
HAIR is a semantic Hardware Abstraction IR describing silicon devices with normalized peripherals, registers, fields, timing, and constraints. Every element carries provenance, enabling reliable generation of SVDs, PACs, HALs, simulators, and documentation.
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