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protein-binding-site

Here are 4 public repositories matching this topic...

LBM-EPFL / PeSTo

Geometric deep learning method to predict protein binding interfaces from a protein structure.

deep-learning protein-structure pytorch geometric-deep-learning protein-binding-site protein-protein-interface

Updated Oct 11, 2023
Jupyter Notebook

ludlows / BALL

BALL project 1.1.1 bugs-free version computational chemistry

bioinformatics chemistry geometry computational-biology protein-binding-site ligsite

Updated Apr 11, 2019
C++

azadkara / protein-binding-site-prediction

Per-residue ligand-binding site prediction from protein structures using frozen ESM-2 embeddings + an MLP head.

bioinformatics deep-learning computational-biology pytorch protein-binding-site protein-language-model esm2

Updated Jul 9, 2026
Jupyter Notebook

SyedKumailHussainNaqvi / ProPepX

ProPepX: A Unified interaction-aware deep learning for protein–peptide binding residue prediction.

transfer-learning protein-binding-site protein-language-model protein-peptide-interaction esm-3 prottrans peptide-binding-site

Updated Jul 13, 2026
Jupyter Notebook

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