A universal toolkit for upstream processing of long RNA reads
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.
Deep Neural Network model that predicts polyadenylation sites
hatpal is an R package for alternative polyadenylation (APA) identification & analysis using 3’ scRNA-seq (10x etc.).
3' terminal exon capture diagnostics for long-read scRNA-seq
Extract set of tandem poly(A) sites from the PolyASite atlas.
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Snakemake workflow for SM-PATseq
To associate your repository with the polyadenylation topic, visit your repo's landing page and select "manage topics."