Repository for pan-spefic primers designed for tiled full genome sequencing or qPCR of viral pathogens. Pathogens include amongst others Hepatitis E virus, Hepatitis A virus, Poliovirus and SARS-COV-2. Primers were designed with varVAMP.
Software for inferring the intrinsic fitness landscape of poliovirus capsid protein (vp1) and comparing it with that of analogous proteins in HIV
Reproducible WPV1 phylogeographic analysis template with synthetic example data
Derzeit wird in Deutschland zur Überwachung der Poliofreiheit eine syndromische Surveillance hospitalisierter Patienten mit aseptischer Meningitis/Enzephalitis und akuter schlaffer Paresen durchgeführt (Enterovirus-Surveillance, EVSurv).
Reproducible Illumina workflow for poliovirus whole-capsid consensus, antigenic-site analysis and phylogeny
(DRAFT) This repository contains the code and data for the paper [Title] in [Journal] ([date of publication])
Offline trilingual desktop system for virus-plate documentation, CCID50 titre calculation (Spearman-Karber), and longitudinal cell-line quality monitoring.
Oxford Nanopore VP1 analysis pipeline for direct poliovirus detection, consensus calling and reporting
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