perturbation-biology

Inverse design of chemical perturbations for desired cellular state transitions with large language models

Shiny app for exploring Tahoe-100M single-cell perturbation metadata and building reproducible subsets

Adversarial-debate LLM agent for predicting CRISPRi perturbation effects on gene expression (Genentech MLGenX BioReasoning Challenge)

Framework and results for CRISPR perturbation prediction benchmarks, extending the Nature Methods setting with LSFT, LOGO, and single-cell transfer analysis.