Workshop Website
Gene Set Integrative Analysis of Multi-Omics
Hawkes Self-Exciting Point Process & Information Cascade Diffusion Engine. Continuous-time stochastic point-process optimizer modeling viral branching factors (η = α/β) and timing narrative releases to trigger compound organic cascades.
Network diffusion algorithms in R.
A short research into commonalities of Parkinson's and Type 2 diabetes using network propagation on a PPI
I discuss and demonstrate the impact of seed nodes selection on information diffusion in a network. I then show how insights obtained by data mining on a network can be integrated with a LLM - like Claude - by building connectors using the Model Context Protocol (MCP) architecture so that users can ask network related questions in natural language.
Phosphoproteomic analysis of ALMS1 and BBS1 gene knockout fibroblasts for the study of the TGF-B pathway.
mND uses multi-layer Network Diffusion to find gene networks that contain high scoring genes. It considers two or more "layers" of genome-wide scores and an interactome.
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