prov-gigatime / GigaTIME Star 411 Code Issues Pull requests GigaTIME: Multimodal AI generates virtual population for tumor microenvironment modeling (Cell) deep-learning spatial-proteomics real-world-evidence oncology pathology multiplex-immunofluorescence Updated Aug 7, 2026 Jupyter Notebook
AstroPathJHU / mIFTO Star 6 Code Issues Pull requests Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package multispectral-images multiplex-immunofluorescence Updated Mar 26, 2026 R
jsonmad / QXYCell Star 1 Code Issues Pull requests Python package for converting multiplex immunofluorescence single-cell exports from QuPath into AnnData objects for spatial analysis. digital-pathology single-cell-analysis immunofluorescence qupath anndata spatial-biology multiplex-imaging multiplex-immunofluorescence Updated Sep 8, 2026 Python
XUANZERA / QuPath-MxIF-Analysis-Toolkit Star 0 Code Issues Pull requests Discussions This repository bridges manual pathological annotation and reproducible computational feature extraction in MxIF WSI analysis. groovy computational-pathology bioimage-analysis tumor-microenvironment qupath whole-slide-image qupath-script spatial-biology multiplex-immunofluorescence mxif pathology-image-analysis Updated May 10, 2026 Groovy