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tjmurchie / PalaeoKin

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PalaeoKin is a lightweight ancient-DNA pipeline for estimating pairwise relatedness from mapped BAMs at low/uneven coverage. It wraps ANGSD + NgsRelate (KING-robust kinship, R0/R1) and samtools, producing a clear summary plus PDF/SVG QC plots, with optional downsampling and allele-balance/mixture diagnostics.

python bash bioinformatics bam population-genetics kinship relatedness ancient-dna angsd low-coverage palaeogenomics hakai-institute archaeogenomics ngsrelate
  • Updated Jun 11, 2026
  • Shell

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