influenza-virus

VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.

Tool for generating influenza A virus genome sequences from FASTQ data

Genome ANnotator for inFLUenza viruses

A GLUE project for influenzaviruses

SGG (Soupirr's Global Genotyper) is a bioinformatics tool designed to identify the genotype and predict the pathogenicity of Virus by using reference sequences. It compares user input sequence against a curated reference database.

Shiny App: Project CovFlu - A Comparative Exploration of Covid-19 and Influenza Demographics in the U.S.

GisAids EpiFlu(influenza virus database) Downloader

A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.

End-to-end host–virus RNA-seq analysis of Influenza A infection.

Code repository associated with Brierley et al., 'An AI for AI..'

MK Flu-Pipe Nextflow is the Nextflow DSL2 implementation of the MK Flu-Pipe Influenza workflow.

Bioinformatics tool for inFLUenza REassortments Detection, including zoonotic segments.

HA Cleavage Site Finder is a bioinformatics workflow developed to identify cleavage sites in the hemagglutinin gene of the influenza A virus (IA) and infer its pathogenicity. The database used for prediction is based on the latest version (2022, to date) of: OFFLU. (2022). Influenza A Cleavage Sites. Version 4th January 2022.

Illumina influenza pipeline for apgap consortium

inFLuenza Amino acid Substitution Caller

Implementación computacional de cebadores y sondas (HA, NP y M1-M2) de Influenza A H1N1 para RT-PCR // Computational implementation of primers and probes (HA, NP, and M1-M2) for Influenza A H1N1 for RT-PCR.

Time series forecasting of influenza subtype prevalence using genomic surveillance data