Identify and quantify MHC eluted peptides from mass spectrometry raw data
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Sep 9, 2026 - Nextflow
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immunopeptidomics
Here are 10 public repositories matching this topic...
DL model to predict HLA peptide presentation
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Jan 31, 2024 - Jupyter Notebook
Foundation model for MHC class I peptide binding prediction built on deep contrastive learning.
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Oct 22, 2025 - Python
A pythonic library for analysing immunopeptidomic experiments
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Aug 8, 2022 - Python
An optimized rescoring pipeline for immunopeptidomics data
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Aug 29, 2026 - Python
PepQueryMHC: Rapid and Comprehensive Tumor Antigen Prioritization from Immunopeptidomics Data
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Aug 11, 2026 - Java
Immunopeptidogenomics pipeline that builds a cryptic peptide database from RNA-seq and identifies non-canonical (cryptic) peptides in immunopeptidomics mass spectrometry data.
bioinformatics nextflow reproducible-research monash-university rnaseq pixi mhc mass-spectrometry hla cancer-research mutect2 stringtie nf-core cancer-immunotherapy gatk4 neoantigens star-aligner immunopeptidomics immunopeptidogenomics cryptic-peptides
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Jul 1, 2026 - Nextflow
Peptides motif search tool and Source protein mappers
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Jul 10, 2026 - HTML
Visualization of Immunopeptides Mapped to Source Proteins Across Multiple Samples
protein-sequences proteomics mass-spectrometry immunoinformatics lc-msms peptide-sequences immunopeptidomics
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Jul 3, 2025 - Jupyter Notebook
R codes for processing MS data
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Jul 9, 2024
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