Unsupervised Illumina EPIC v2 methylation array pipeline (QC, NOOB normalization, PCA, hierarchical clustering, heatmap, MDS, and UMAP from raw IDAT files)
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Updated
Mar 18, 2026 - R
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illumina-epic
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EPIC methylation analysis of OED-to-OSCC progression integrating baseline definitions, limma modeling, CpG effect sizes, candidate genes, spatial transcriptomics, and sensitivity analyses.
bioinformatics cancer-genomics dna-methylation limma epigenomics multi-omics translational-research spatial-transcriptomics oscc oral-cancer illumina-epic
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Updated
Aug 5, 2026 - R
GSE142512 450K and EPIC DNA methylation resources for Bioconductor ExperimentHub. DOI: 10.5281/zenodo.21198533
genomics geo epigenetics bioconductor experimenthub dna-methylation zenodo homo-sapiens summarizedexperiment type-1-diabetes peripheral-blood longitudinal-study illumina-epic illumina-450k methylation-array rangedsummarizedexperiment gse142512
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Updated
Aug 7, 2026 - R
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