hidivelab

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

Fast, flexible and extensible genome browser.

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

A declarative interactive genomics visualization library for Python.

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

A minimal Zarr image viewer based on Viv.

Grammar of Scalable Linked Interactive Nucleotide Graphics

Javascript implementation of Zarr

The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and …

Interactive multiscale visualization for structural variation in human genomes

Python API and Jupyter widget for Vitessce

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

A 3D genome data processing tutorial for ISMB/ECCB 2017

R API and htmlwidget for Vitessce

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

R interface to 'Gos'

Builds a docker container wrapping higlass-server and higlass-client in nginx

Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots