A simple pipeline for bacterial assembly and quality control
Measles Sequence Analysis and Automation
Estimate the relative abundance of sequence reads originating from different species in a sample.
Assemble and QC viral reads with a reference scheme
An example pipeline for running on IRIDA Next
Quickly refines a reference set of samples based on distance.
Pipeline for submitting data to INSDC databases for IRIDA Next
Pipeline for downloading data from INSDC databases for IRIDA Next.
An example pipeline for running on IRIDA-Next with nf-schema
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