glycoproteomics

pGlyco is a software tool dedicated for the analysis of intact glycopeptides/glycoproteins using mass spectrometry.

🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data

A library for describing the structure of glycopeptides

This is a Java stand-alone tool for the quantitation of glyco sites. It calculates the proportion of different glyco-PTMs in a protein of interest. It supports data from IP2 (quant compare output files) and MaxQuant.

Shared R helpers for Wu lab proteomics analysis: TMT normalization (SL + TMM), limma differential expression, and figure theming. Verified against published OGlycoTM output.

Generate proteoforms from a list of glycopeptides.

Data and code needed to recreate plots for manuscript doi.org/10.1021/jasms.2c00249.

3D implementation of The Symbol Nomenclature For Glycans (SNFG) for UCSF Chimera

Tutorials for Glycoproteomic Data Analysis using R and Python.

It assigns the phosphorylation site in protein

Systematic Quantification of Protein O-GlcNAcylation under N-Glycosylation Inhibition

Find glycopeptide peptide sequences in protein FASTA files.

InterVenn — independent third-party profile of a public API surface, by API Evangelist. InterVenn Biosciences is a digital-biology company applying artificial intelligence and mass spectrometry to glycoproteomics, the large-scale study of glycosylated proteins, to discover novel biomarkers for precision medicine.

Neo4j Glycoproteomics Graph Tool for storing glycopeptide records.

Utilities for mzML mass spectrometry file processing, fragment ion calculation, and peak matching

Python tool for annotating MS/MS spectra of glycopeptides with EThcD support and false match rate calculation

Describe Glycosylation Structural Properties in a Site Specific Manner