A Python library for discovery of genotype-phenotype associations
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Mar 24, 2026 - Python
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genotype-phenotype
Here are 5 public repositories matching this topic...
nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.
workflow bioinformatics pipeline nextflow deep-mutational-scanning nf-core shotgun-sequencing genotype-phenotype community-workflow
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Jun 23, 2026 - R
Genotype–phenotype association analysis of carbapenem resistance in Klebsiella pneumoniae using BV-BRC AMR data (R, statistical genomics).
bioinformatics genomics data-analysis microbial-genomics r-language antimicrobial-resistance klebsiella-pneumoniae genotype-phenotype
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May 6, 2026 - HTML
Reference implementation of the Intra-Organismal Data Symbiosis (IODS) framework. Multimodal biological translation: DNA, phenotype, environment.
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Jun 17, 2026 - Python
Deterministic, interpretable genome→phenotype decoder: calls antibiotic/antiviral/antifungal resistance from DNA + names the exact genes/mutations driving each call. Spans bacteria, M. tuberculosis, fungi, HIV-1 & SARS-CoV-2 — independently validated on FREE measured wet-lab labels (EBI AMR Portal, Stanford HIVDB). Not a clinical tool.
bioinformatics genomics amr hiv tuberculosis interpretable-ml antimicrobial-resistance antiviral-resistance sars-cov-2 genotype-phenotype
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Jul 13, 2026 - Python
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