Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
Open source digital twin framework for flow cytometry, modeling fluidics, light scattering, electronics, triggering, and event generation for extracellular vesicle analysis.
Repository for the tidyNano package to analyze and visualize NanoSight/NTA data.
We proposed an approach that use the keywords of research paper as feature and generate a Restricted Boltzmann Machine (RBM).
Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images
Data processing pipeline for extracellular small RNA-seq from human specimen
The EVisionary Framework provides a rigorously harmonized, multi-omics Extracellular Vesicle (EV) metadata repository. This dataset was created to resolve the pervasive metadata fragmentation, semantic inconsistencies, and structural conflations present in legacy EV databases.
Repositoy with all code from my PhD thesis, about the proteomics analysis of the extracellular vesicles (EVs) produced by the probiotic bacterium Propionibacterium freudenreichii.
A command line tool for automated morphological analysis and visualisation of extracellular vesicles (EVs) from cryo-electron tomography (cryo-ET) data.
nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)
Extracellular Vesicles Abundance of ncRNAs expression quantification tool
SVM-based multiclassification approach for cancer detection using exosome mass spectrometry data
Code associated with ‘Wildfires and extracellular vesicles: Exosomal MicroRNAs as mediators of cross-tissue cardiopulmonary responses to biomass smoke' published in 2022.
Script associated with 'Approaches to Incorporate Extracellular Vesicles into Exposure Science, Toxicology, and Public Health Research', published in 2022 (PMID: 35217808).
Involvement of Extracellular Vesicle-derived miRNA clusters in Developing Healthy and Rett Syndrome Brain Organoids
Involvement of Extracellular Vesicle-derived miRNA clusters in Developing Healthy and Rett Syndrome Brain Organoids
Script that associates with `Respiratory extracellular vesicle isolation optimization through proteomic profiling of equine samples and identification of candidates for cell-of-origin studies'
Script that associates with: ‘Extracellular Vesicles altered by a Per- and Polyfluoroalkyl Substance Mixture: In Vitro Dose-Dependent Release, Chemical Content, and MicroRNA Signatures involved in Liver Health’
This is a repository for the code and data of the article "Nanoscale organization of universal extracellular vesicle markers in single vesicles enables cancer discrimination".
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