Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
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Jul 10, 2026 - Python
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ensembl-vep
Here are 7 public repositories matching this topic...
Clinical VCF variant annotation platform integrating Ensembl VEP, ClinVar, 3D PDB structural mapping, pharmacogenomics (PGx), and precision oncology clinical trials.
bioinformatics genomics vcf clinvar pharmacogenomics variant-annotation precision-oncology ensembl-vep
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Aug 8, 2026
A lightweight toolkit to inspect, validate, and manage plugin data for Ensembl Variant Effect Predictor (VEP).
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May 29, 2025 - Shell
VEP environments containerized for singularity
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Aug 23, 2018 - Shell
A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.
haskell parsing composable vcf-converter variant-call-format variant-effect-prediction ensembl-vep unix-tool
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Sep 23, 2020 - Haskell
Terminal-based AI assistant for interpreting genetic variants, combining Ensembl VEP, ClinVar, and MCP tool-calling to turn variant identifiers into readable clinical and biological annotations.
python bioinformatics genomics clinvar variant-annotation hgvs ensembl-vep llm rich-cli openrouter model-context-protocol
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Jul 10, 2026 - Python
This repo contains the code to dockerize a ensembl REST server on your own local machine. It allows the user to specify a different configuration to a locally hosted ensembl database and tweeking of the throtelling settings setup by default by ensembl for their own servers
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May 12, 2023 - Dockerfile
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