deseq2-analysis

Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2

An application for exploring and visualizing differential gene expression data created with DESeq2

Off-target analysis of siRNA knock down paired with RNAseq

Pipeline for RNA-seq analysis

Breast Cancer Dataset Analysis using RStudio

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

Differential Expression Analysis of protein, Gene set enrichment analysis, Multi-omic factor analysis, Pathway analysis, WGCNA

Analysis of B. saida full liver transcriptome data from raw reads to gene ontology.

Tutorial for RNA sequence data processing and simple downstream analysis with Drosophila melanogaster

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

Post processing of Capture-C experiments

It contains the requirements, code, and backlog of my bioinformatics master's thesis.

Bulk Rna-seq Analysis

Differential peak analysis, genomic sequences associated with distinct experimental conditions

Automated DE analysis by DESeq2

Computational drug repurposing for LUAD using TCGA + CMap + multi-omics integration.

Reference-guided reanalysis of published finger millet (Eleusine coracana) drought RNA-seq against the chromosome-scale KNE 796-S assembly, with a documented audit of four analytical defects found and corrected.

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Differential gene expression analysis of TCGA breast cancer RNA-seq data using DESeq2