Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Hidden Markov models for cell lineage trees
More detailed growth models using inference.
Multifuricating Developmental cEll Lineage Tree Alignment (mDELTA) algorithm
This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.
Cell lineage analysis for timelapse microscopy. Build one spatiotemporal graph tracking cell lineage and spatial neighbours together, easily handling large and complex datasets.
Explores orthotopic liver transplantation and IRI data
Deep learning pipeline for 3D cell detection, tracking, and lineage reconstruction in developing zebrafish embryos using the BioHub Cell Tracking During Development dataset.
Code for modeling performed in Barney et al.
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