Open-source image alignment and brain atlas registration for Fiji / ImageJ2. Review mouse brain microscopy against Allen CCFv3, select anatomical ROIs, and export crops and masks. Supports resumable batch review.
java open-source imagej imagej2 fiji neuroscience roi microscopy image-registration allen-brain-atlas histology image-alignment brain-atlas bioimage-analysis immunofluorescence roi-analysis atlas-registration ccfv3
-
Updated
Sep 8, 2026 - Java