burrows-wheeler-transformation

Hamming, Huffman and etc algorithms

Fast, GPU-based decompressor for bzip2 streams.

A (rookie makeshift improvised amateur suboptimal crude non-production-ready) bzip2 compression algorithm implementation from scratch.

Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.

This tool aligns reads back to a reference genome. It is also my final project for CSE 185 Advanced Bioinformatics Lab. Won Best Presentation Award among 60+ student projects.

Practices of Algorithm for hard problems

A Python-based implementation of the Burrows-Wheeler Alignment (BWA) algorithm for DNA sequence matching. This project leverages core data structures including the Burrows-Wheeler Transform (BWT), Suffix Array (SA), and auxiliary arrays (C, Occ) to enable efficient and accurate substring matching. It focuses on an unoptimized, recursive depth-first

Python implementation of the Burrow Wheeler Algorithm with a GUI

Several computational genomics projects

Implement a server (along with a corresponding client), that accepts a DNA sequence and returns its Burrows Wheeler Transform (BWT). It should also accept a BWT and return the corresponding original DNA sequence.

MA3288 Advanced Undergraduate Research Opportunites (UROPS) in Mathematics I

A repository containing all the file projects that I have for the Bioinformatics 6 (COMP 4312e) course.

Python code to automatically calculate strings using the Burrow Wheeler Algorithm including api and client-server access.