OLAPH: Improving Factuality in Biomedical Long-form Question Answering
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Sep 10, 2024 - Python
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biomedical-research
Here are 85 public repositories matching this topic...
Differential analysis tool for coding-free researchers – instant statistical results and charts, ready for your lab meeting. Just unzip and run! No-coding!
bioinformatics statistics r-language hypothesis-testing python-gui automatic-testing no-coding lab-meeting biomedical-research
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Sep 10, 2026 - Python
MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, full text, citations, and tenant-safe deployment.
python multi-tenant mcp pubmed open-access entrez ncbi fulltext pico europe-pmc citation-analysis evidence-based-medicine semantic-scholar biomedical-research systematic-review literature-search openalex model-context-protocol mcp-server streamable-http
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Sep 9, 2026 - Python
Chinese Mammography Database (CMMD dataset) Deep Learning Classification Pipeline
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Mar 15, 2022 - Jupyter Notebook
Connecting AI to biomedical data
bioinformatics mcp drug-discovery mygene opentargets mychem biomedical-research monarch-initiative ai-agent model-context-protocol mydisease
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May 14, 2026 - Python
Website for the JuliaHealth organization (powered by Franklin.jl).
medicine julia julia-language health biomedical-informatics healthcare public-health health-care electronic-health-records julia-programming-language health-informatics franklin computational-health biomedical-research digital-health clinical-informatics health-information-technology juliahealth juliamedicine juliamedical
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May 16, 2025 - Julia
Accelerate common Petri dish assays with AI.
swift machine-learning computer-vision artificial-intelligence ios-app object-detection microbiology phage plaque biomedical-research yolov5 petri-dish
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Oct 28, 2025 - Swift
Claude Code skill for verifying OpenEvidence biomedical citations against PubMed with parallel accuracy scoring and audit reports
biomedical-research claim-validation pubmed-api citation-verification model-context-protocol claude-code evidence-audit open-evidence parallel-verification
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Apr 20, 2026 - TeX
curated links and customized materials to support biomedical researchers in implementing open science approaches
training open-source computational-biology open-science reproducibility biomedical-research reproducible-computational-methods
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Feb 9, 2026 - JavaScript
Compliance-first coding harness for working with sensitive biomedical research data.
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Sep 2, 2026 - Python
A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.
computational-biology data-visualization data-analysis proteomics dataset-management biomedical-research proteomics-data-analysis user-friendly-interface clinical-proteomics proteomics-software lightweight-cloning
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Oct 15, 2025 - Jupyter Notebook
Biomedical knowledge graph builder.
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Sep 7, 2025 - Jupyter Notebook
Repository containing trained YOLOv5 object detection models used within OnePetri for Petri dish and plaque detection.
machine-learning computer-vision artificial-intelligence object-detection microbiology phage plaque biomedical-research yolov5 petri-dish
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Oct 28, 2025
Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research
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Jul 25, 2019 - HTML
My assignments and projects concerned with Biomedical Engineering
biomedical-informatics software-engineering biomedical-image-processing biomedical-engineering biomedical-data-science biomedical-image-analysis biomedical-research
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Aug 9, 2024 - TeX
B.Sc. Thesis Deep Learning & NLP research on Medical Image Captioning
nlp machine-learning deep-learning transformers cnn pytorch nltk neural-networks biomedical-image-processing keras-tensorflow publication-repository bert-models machine-learning-research biomedical-research sota-model
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Feb 3, 2024 - Python
suggestions to practice machine learning for biomedical applications
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May 4, 2021
Repository of excel templates of routine tasks performed in the laboratory
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Nov 21, 2022
PubMed literature assistant with journal metrics, smart filtering and local Markdown notes
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Aug 13, 2026 - JavaScript
This repository provides a practical, data-centric AI/ML module for biomedical researchers. It covers R programming, data preparation, model building, and AI/ML applications using AWS SageMaker and Jupyter notebooks.
python aws machine-learning ai deep-learning tensorflow keras artificial-intelligence feature-engineering model-interpretation sagemaker responsible-ai biomedical-research data-centric-ai model-building-and-evaluation fair-data-principles
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Jun 4, 2025 - Jupyter Notebook
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