antibiotic-resistance

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

(Meta-)genome screening for functional and natural product gene sequences

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

ARG normalization by mapping to the ARO ontology.

A resistome profiler for Graphing Resistance Out Of meTagenomes

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

AcinetoScope: A species-specific computational pipeline for rapid, comprehensive Acinetobacter baumannii outbreak investigation and resistance gene tracking

Argo: species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping

Ecosystem of numerical methods for microbial kinetics data analysis, from preprocessing to result interpretation.

Desktop tool for microbial genome annotation and gene detection

Curation of Antibiotic Resistance Genes by using crowdsourcing

Python package to interact with the PATRIC database (https://www.patricbrc.org)

Antibiotic Resistant Target Seeker (ARTS)

Antibiotic discovery using graph deep learning, with Chemprop.

PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features

Extract discriminatory ARGs from metagenomics samples

Interpretable genotype-to-phenotype models with rule-based classifiers

Visualise your isolate's antibiotic resistance profile

A tool for AMR gene family prediction, simple and ML-based