🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
Source code of the Bgee pipeline used to build the Bgee database
R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays
A collection of miscellaneous bioinformatics scripts
Smarter database repository
Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies
read Affymetrix .CEL files
Gene expression experiments using Python and R
A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)
App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0
Creates a GCT file from a set of CEL files from Affymetrix ST arrays.
Find shared SNPs between different microarray chips
Microarray Analysis of Differential Expression
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