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Update DESCRIPTION to suggest SingleR package; modify Session 2 vigne… #15

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Merged
stemangiola merged 1 commit into from
May 20, 2026
Merged

Update DESCRIPTION to suggest SingleR package; modify Session 2 vigne… #15

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1 change: 1 addition & 0 deletions DESCRIPTION
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Expand Up @@ -51,6 +51,7 @@ Suggests:
Seurat,
cowplot,
scRNAseq,
SingleR,
SPOTlight,
SubcellularSpatialData,
forcats,
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4 changes: 1 addition & 3 deletions vignettes/Session_2_Tidy_spatial_analyses.Rmd
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Expand Up @@ -921,8 +921,6 @@ knitr::include_graphics(here("inst/images/cellNexus.png"))
library(cellNexus)
library(HDF5Array)



brain_reference =

# Query metadata across 30M cells
Expand All @@ -941,7 +939,7 @@ brain_reference =
brain_reference
```

For large collection it is convenient (more efficient to query) to repackage the on-disl object in a consolidated file
DON'T RUN: For large collection it is convenient (more efficient to query) to repackage the on-disl object in a consolidated file

```{r, eval=FALSE}
DelayedArray::setAutoBlockSize(size = 1e+09)
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