Codex/update genome fasta pipe mode options#2

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wwood:codex/update-genome-fasta-pipe-mode-options

Sep 2, 2025

Commits on Aug 1, 2025

Partially address https://github.com/BioContainers/containers/issues/602
wwood
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Commits on Aug 14, 2025

Commits on Aug 16, 2025

summarise: Fail when --krona used with taxonomic profile input (#242)
wwood
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Commits on Aug 20, 2025

Make GTDB-Tk optional.
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Commits on Aug 22, 2025

actions: Pytest with -v.
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Commits on Aug 26, 2025

Add docs AGENTS instructions
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