v1.2.1

What's Changed

• Fix: update rpy2 version by @mumichae in #433
• chore(main): release 1.2.1 by @github-actions[bot] in #434

Full Changelog: v1.2.0...v1.2.1

v1.2.0

What's Changed

• Bump version: 1.1.6 → 1.1.7 by @mumichae in #422
• Pin anndata2ri by @mumichae in #427
• PC regression: optimise backend by @mumichae in #430
• Pass kwargs to harmony.harmonize by @harryhaller001 in #424
• Use dense matrices in diffusion_nn by @schafferde in #428
• Chore: Create initial changelog and switch to release-please by @mumichae in #431
• Feat: add moransi by @MxMstrmn in #304
• chore(main): release 1.2.0 by @github-actions[bot] in #432

New Contributors

• @harryhaller001 made their first contribution in #424
• @schafferde made their first contribution in #428

Full Changelog: v1.1.7...v1.2.0

v1.1.7

What's Changed

• Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows by @dependabot[bot] in #415
• Optimise PC regression by @mumichae in #408
• Extend cell cycle gene scoring by @mumichae in #421

New Contributors

• @dependabot[bot] made their first contribution in #415

Full Changelog: v1.1.6...v1.1.7

v1.1.6

What's Changed

• Refactor LISI metrics by @mumichae in #395
• Update codecov with token by @mumichae in #407
• Use scib.cl.cluster_optimal_resolution in metrics wrapper by @mumichae in #405
• Use precomputed clustering by @mumichae in #406
• Update python-igraph dependency to igraph by @szhorvat in #409
• Fix lint by @mumichae in #414
• M.A might not be available, you should use M.toarray() by @Zhongzheng99 in #410
• Ensure essential packages are not detached! by @zhongzheng1999 in #402
• Skip labels before loop by @johnarevalo in #394
• Fix kBET test for 1.1.6 by @mumichae in #420

New Contributors

• @szhorvat made their first contribution in #409
• @Zhongzheng99 made their first contribution in #410
• @zhongzheng1999 made their first contribution in #402

Full Changelog: v1.1.5...v1.1.6

v1.1.5

What's Changed

• Update dependencies by @mumichae in #396
• Fix argument deprecation by @mumichae in #404

Full Changelog: v1.1.4...v1.1.5

v1.1.4

What's Changed

• Add GPU_id param for DESC by @johnarevalo in #372
• Update documentation clustering by @mumichae in #373
• more readable PCA computation and info retrieval by @mumichae in #377
• Set names when reading LISI CSV files by @lazappi in #380

Full Changelog: v1.1.3...v1.1.4

What's Changed

• Add GPU_id param for DESC by @johnarevalo in #372
• Update documentation clustering by @mumichae in #373
• more readable PCA computation and info retrieval by @mumichae in #377
• Set names when reading LISI CSV files by @lazappi in #380

Full Changelog: v1.1.3...v1.1.4

v1.1.3

What's Changed

• Run iso label as discussed on friday by @danielStrobl in #370
• Scale isolated label ASW by @mumichae in #371
• Fix PCA regression error for sparse matrices by @mumichae in #364

Full Changelog: v1.1.2...v1.1.3

v1.1.2

What's Changed

• Fix code coverage by @mumichae in #347
• Fix sc best practices link by @mumichae in #356
• Add perfect isolabel ASW test by @mumichae in #362
• Make louvain an optional dependency by @mumichae in #361
• Update isolated_labels.py by @danielStrobl in #368

Full Changelog: v1.1.1...v1.1.2

v1.1.1

Full Changelog: v1.1.0...v1.1.1

v1.1.0

What's Changed

• Add documentation for metrics preprocessing by @mumichae in #312
• Add test for duplicate columns by @mumichae in #311
• add deprecation decorator for asw_batch by @mumichae in #354

Full Changelog: v1.0.5...v1.1.0