test-repo

test-repo

Functions

Differential protein expression profiling

# biotools-function
operation:
- term: Differential protein expression profiling
  uri: http://edamontology.org/operation_3741
input:
- data:
    term: Expression data
    uri: http://edamontology.org/data_2603
  format:
  - term: CSV
    uri: http://edamontology.org/format_3752
  - term: TSV
    uri: http://edamontology.org/format_3475
- data:
    term: Sequence
    uri: http://edamontology.org/data_2044
  format:
  - term: FASTA
    uri: http://edamontology.org/format_1929
output:
- data:
    term: Expression data
    uri: http://edamontology.org/data_2603
  format:
  - term: xlsx
    uri: http://edamontology.org/format_3620
  - term: HTML
    uri: http://edamontology.org/format_2331
cmd: './prolfqua_dea.sh -i data_dir/ -d annotation.xlsx -y config.yaml -w NameOfAnalysis
  -s DIANN

  # and again you run the version within the docker container with

  # ./prolfquapp_docker.sh prolfqua_dea.sh -i data_dir/ -d annotation.xlsx -y config.yaml
  -w NameOfAnalysis -s DIANN'

PEW PEW PEW

Pew pew

# biotools-function
operation:
- term: Validation
  uri: http://edamontology.org/operation_2428
input:
- data:
    term: Expression data
    uri: http://edamontology.org/data_2603
  format:
  - term: xlsx
    uri: http://edamontology.org/format_3620
output:
- data:
    term: Quality control report
    uri: http://edamontology.org/data_3914
  format:
  - term: HTML
    uri: http://edamontology.org/format_2331