Enhance application features, improve error handling

.codex/skills/openspec-apply-change/SKILL.md

@@ -6,11 +6,13 @@ compatibility: Requires openspec CLI.
 metadata:
   author: openspec
   version: "1.0"
-  generatedBy: "1.4.1"
+  generatedBy: "1.5.0"
 ---
 
 Implement tasks from an OpenSpec change.
 
+**Store selection:** If the user names a store (a store is a standalone OpenSpec repo registered on this machine) or the work lives in one, run `openspec store list --json` to discover registered store ids, then pass `--store <id>` on the commands that read or write specs and changes (`new change`, `status`, `instructions`, `list`, `show`, `validate`, `archive`, `doctor`, `context`). Other commands do not take the flag. Hints printed by commands already carry the flag; keep it on follow-ups. Without a store, commands act on the nearest local `openspec/` root.
+
 **Input**: Optionally specify a change name. If omitted, check if it can be inferred from conversation context. If vague or ambiguous you MUST prompt for available changes.
 
 **Steps**
@@ -50,8 +52,6 @@ Implement tasks from an OpenSpec change.
    - If `state: "all_done"`: congratulate, suggest archive
    - Otherwise: proceed to implementation
 
-   **Workspace guard:** If status JSON reports `actionContext.mode: "workspace-planning"` and `allowedEditRoots` is empty, explain that full workspace apply is not supported in this slice. Treat linked repos and folders as read-only context, ask the user to select an affected area through an explicit implementation workflow, and STOP before editing files.
-
 4. **Read context files**
 
    Read every file path listed under `contextFiles` from the apply instructions output.

.codex/skills/openspec-archive-change/SKILL.md

@@ -6,11 +6,13 @@ compatibility: Requires openspec CLI.
 metadata:
   author: openspec
   version: "1.0"
-  generatedBy: "1.4.1"
+  generatedBy: "1.5.0"
 ---
 
 Archive a completed change in the experimental workflow.
 
+**Store selection:** If the user names a store (a store is a standalone OpenSpec repo registered on this machine) or the work lives in one, run `openspec store list --json` to discover registered store ids, then pass `--store <id>` on the commands that read or write specs and changes (`new change`, `status`, `instructions`, `list`, `show`, `validate`, `archive`, `doctor`, `context`). Other commands do not take the flag. Hints printed by commands already carry the flag; keep it on follow-ups. Without a store, commands act on the nearest local `openspec/` root.
+
 **Input**: Optionally specify a change name. If omitted, check if it can be inferred from conversation context. If vague or ambiguous you MUST prompt for available changes.
 
 **Steps**
@@ -33,8 +35,6 @@ Archive a completed change in the experimental workflow.
    - `planningHome`, `changeRoot`, `artifactPaths`, and `actionContext`: path and scope context
    - `artifacts`: List of artifacts with their status (`done` or other)
 
-   If status reports `actionContext.mode: "workspace-planning"`, explain that workspace archive is not supported in this slice and STOP. Do not move workspace changes into repo-local archives or edit linked repos.
-
    **If any artifacts are not `done`:**
    - Display warning listing incomplete artifacts
    - Use **AskUserQuestion tool** to confirm user wants to proceed

.codex/skills/openspec-bulk-archive-change/SKILL.md

@@ -0,0 +1,248 @@
+---
+name: openspec-bulk-archive-change
+description: Archive multiple completed changes at once. Use when archiving several parallel changes.
+license: MIT
+compatibility: Requires openspec CLI.
+metadata:
+  author: openspec
+  version: "1.0"
+  generatedBy: "1.5.0"
+---
+
+Archive multiple completed changes in a single operation.
+
+This skill allows you to batch-archive changes, handling spec conflicts intelligently by checking the codebase to determine what's actually implemented.
+
+**Store selection:** If the user names a store (a store is a standalone OpenSpec repo registered on this machine) or the work lives in one, run `openspec store list --json` to discover registered store ids, then pass `--store <id>` on the commands that read or write specs and changes (`new change`, `status`, `instructions`, `list`, `show`, `validate`, `archive`, `doctor`, `context`). Other commands do not take the flag. Hints printed by commands already carry the flag; keep it on follow-ups. Without a store, commands act on the nearest local `openspec/` root.
+
+**Input**: None required (prompts for selection)
+
+**Steps**
+
+1. **Get active changes**
+
+   Run `openspec list --json` to get all active changes.
+
+   If no active changes exist, inform user and stop.
+
+2. **Prompt for change selection**
+
+   Use **AskUserQuestion tool** with multi-select to let user choose changes:
+   - Show each change with its schema
+   - Include an option for "All changes"
+   - Allow any number of selections (1+ works, 2+ is the typical use case)
+
+   **IMPORTANT**: Do NOT auto-select. Always let the user choose.
+
+3. **Batch validation - gather status for all selected changes**
+
+   For each selected change, collect:
+
+   a. **Artifact status** - Run `openspec status --change "<name>" --json`
+      - Parse `schemaName`, `artifacts`, `planningHome`, `changeRoot`, `artifactPaths`, and `actionContext`
+      - Note which artifacts are `done` vs other states
+
+   b. **Task completion** - Read `artifactPaths.tasks.existingOutputPaths` from status JSON
+      - Count `- [ ]` (incomplete) vs `- [x]` (complete)
+      - If no tasks file exists, note as "No tasks"
+
+   c. **Delta specs** - Check `artifactPaths.specs.existingOutputPaths` from status JSON
+      - List which capability specs exist
+      - For each, extract requirement names (lines matching `### Requirement: <name>`)
+
+4. **Detect spec conflicts**
+
+   Build a map of `capability -> [changes that touch it]`:
+
+   ```
+   auth -> [change-a, change-b]  <- CONFLICT (2+ changes)
+   api  -> [change-c]            <- OK (only 1 change)
+   ```
+
+   A conflict exists when 2+ selected changes have delta specs for the same capability.
+
+5. **Resolve conflicts agentically**
+
+   **For each conflict**, investigate the codebase:
+
+   a. **Read the delta specs** from each conflicting change to understand what each claims to add/modify
+
+   b. **Search the codebase** for implementation evidence:
+      - Look for code implementing requirements from each delta spec
+      - Check for related files, functions, or tests
+
+   c. **Determine resolution**:
+      - If only one change is actually implemented -> sync that one's specs
+      - If both implemented -> apply in chronological order (older first, newer overwrites)
+      - If neither implemented -> skip spec sync, warn user
+
+   d. **Record resolution** for each conflict:
+      - Which change's specs to apply
+      - In what order (if both)
+      - Rationale (what was found in codebase)
+
+6. **Show consolidated status table**
+
+   Display a table summarizing all changes:
+
+   ```
+   | Change              | Artifacts | Tasks | Specs   | Conflicts | Status |
+   |---------------------|-----------|-------|---------|-----------|--------|
+   | schema-management   | Done      | 5/5   | 2 delta | None      | Ready  |
+   | project-config      | Done      | 3/3   | 1 delta | None      | Ready  |
+   | add-oauth           | Done      | 4/4   | 1 delta | auth (!)  | Ready* |
+   | add-verify-skill    | 1 left    | 2/5   | None    | None      | Warn   |
+   ```
+
+   For conflicts, show the resolution:
+   ```
+   * Conflict resolution:
+     - auth spec: Will apply add-oauth then add-jwt (both implemented, chronological order)
+   ```
+
+   For incomplete changes, show warnings:
+   ```
+   Warnings:
+   - add-verify-skill: 1 incomplete artifact, 3 incomplete tasks
+   ```
+
+7. **Confirm batch operation**
+
+   Use **AskUserQuestion tool** with a single confirmation:
+
+   - "Archive N changes?" with options based on status
+   - Options might include:
+     - "Archive all N changes"
+     - "Archive only N ready changes (skip incomplete)"
+     - "Cancel"
+
+   If there are incomplete changes, make clear they'll be archived with warnings.
+
+8. **Execute archive for each confirmed change**
+
+   Process changes in the determined order (respecting conflict resolution):
+
+   a. **Sync specs** if delta specs exist:
+      - Use the openspec-sync-specs approach (agent-driven intelligent merge)
+      - For conflicts, apply in resolved order
+      - Track if sync was done
+
+   b. **Perform the archive**:
+      ```bash
+      mkdir -p "<planningHome.changesDir>/archive"
+      mv "<changeRoot>" "<planningHome.changesDir>/archive/YYYY-MM-DD-<name>"
+      ```
+
+   c. **Track outcome** for each change:
+      - Success: archived successfully
+      - Failed: error during archive (record error)
+      - Skipped: user chose not to archive (if applicable)
+
+9. **Display summary**
+
+   Show final results:
+
+   ```
+   ## Bulk Archive Complete
+
+   Archived 3 changes:
+   - schema-management-cli -> archive/2026-01-19-schema-management-cli/
+   - project-config -> archive/2026-01-19-project-config/
+   - add-oauth -> archive/2026-01-19-add-oauth/
+
+   Skipped 1 change:
+   - add-verify-skill (user chose not to archive incomplete)
+
+   Spec sync summary:
+   - 4 delta specs synced to main specs
+   - 1 conflict resolved (auth: applied both in chronological order)
+   ```
+
+   If any failures:
+   ```
+   Failed 1 change:
+   - some-change: Archive directory already exists
+   ```
+
+**Conflict Resolution Examples**
+
+Example 1: Only one implemented
+```
+Conflict: specs/auth/spec.md touched by [add-oauth, add-jwt]
+
+Checking add-oauth:
+- Delta adds "OAuth Provider Integration" requirement
+- Searching codebase... found src/auth/oauth.ts implementing OAuth flow
+
+Checking add-jwt:
+- Delta adds "JWT Token Handling" requirement
+- Searching codebase... no JWT implementation found
+
+Resolution: Only add-oauth is implemented. Will sync add-oauth specs only.
+```
+
+Example 2: Both implemented
+```
+Conflict: specs/api/spec.md touched by [add-rest-api, add-graphql]
+
+Checking add-rest-api (created 2026-01-10):
+- Delta adds "REST Endpoints" requirement
+- Searching codebase... found src/api/rest.ts
+
+Checking add-graphql (created 2026-01-15):
+- Delta adds "GraphQL Schema" requirement
+- Searching codebase... found src/api/graphql.ts
+
+Resolution: Both implemented. Will apply add-rest-api specs first,
+then add-graphql specs (chronological order, newer takes precedence).
+```
+
+**Output On Success**
+
+```
+## Bulk Archive Complete
+
+Archived N changes:
+- <change-1> -> archive/YYYY-MM-DD-<change-1>/
+- <change-2> -> archive/YYYY-MM-DD-<change-2>/
+
+Spec sync summary:
+- N delta specs synced to main specs
+- No conflicts (or: M conflicts resolved)
+```
+
+**Output On Partial Success**
+
+```
+## Bulk Archive Complete (partial)
+
+Archived N changes:
+- <change-1> -> archive/YYYY-MM-DD-<change-1>/
+
+Skipped M changes:
+- <change-2> (user chose not to archive incomplete)
+
+Failed K changes:
+- <change-3>: Archive directory already exists
+```
+
+**Output When No Changes**
+
+```
+## No Changes to Archive
+
+No active changes found. Create a new change to get started.
+```
+
+**Guardrails**
+- Allow any number of changes (1+ is fine, 2+ is the typical use case)
+- Always prompt for selection, never auto-select
+- Detect spec conflicts early and resolve by checking codebase
+- When both changes are implemented, apply specs in chronological order
+- Skip spec sync only when implementation is missing (warn user)
+- Show clear per-change status before confirming
+- Use single confirmation for entire batch
+- Track and report all outcomes (success/skip/fail)
+- Preserve .openspec.yaml when moving to archive
+- Archive directory target uses current date: YYYY-MM-DD-<name>
+- If archive target exists, fail that change but continue with others