A toolset for data pipelines in Genomics

Dependencies

Clone the source code with git:

  $ git clone https://github.com/suvayu/genome-genie.git

Install dependencies: all dependencies are available on conda-forge or PyPI, except for glom. Which is available only on PyPI. If you are using conda, you may install like this:
```
  $ conda install --file requirements-conda.txt
  $ pip3 install [--user] glom
```
If you are using pip, you may install like this:
```
  $ pip3 install [--user] -r requirements.txt
```
To update (if you have not made any local changes), simply run:
```
  $ git pull
```
Install Genome Genie
```
  $ cd genome-genie
  $ pip3 install [--user] . -e
```
The -e will allow you to update Genome Genie easily (no need to install again).