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2023_ImageCLEFmed_Mediqa @ 4f76466
2023_ImageCLEFmed_Mediqa @ 4f76466
 
 
TaskA
TaskA
 
 
TaskB
TaskB
 
 
.dockerignore
.dockerignore
 
 
.gitignore
.gitignore
 
 
.gitmodules
.gitmodules
 
 
Dockerfile
Dockerfile
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
Task A - Inference.py
Task A - Inference.py
 
 
Task A - Section Header Multi Class Classification - LoRA.py
Task A - Section Header Multi Class Classification - LoRA.py
 
 
Task A - Summarization - LoRA.py
Task A - Summarization - LoRA.py
 
 
Task A and B - EDA.ipynb
Task A and B - EDA.ipynb
 
 
TaskA - Decoding - EDA.py
TaskA - Decoding - EDA.py
 
 
TaskA - Metric Optimization - Beam Search - LoRA.py
TaskA - Metric Optimization - Beam Search - LoRA.py
 
 
TaskA-augmented_data.csv
TaskA-augmented_data.csv
 
 
TaskA_and_B-idx2label.json
TaskA_and_B-idx2label.json
 
 
TaskA_and_B-label2idx.json
TaskA_and_B-label2idx.json
 
 
TaskA_inference_submission.py
TaskA_inference_submission.py
 
 
TaskB_OOF_Scores.csv
TaskB_OOF_Scores.csv
 
 
TaskB_Summarization_BioBart_Inference.py
TaskB_Summarization_BioBart_Inference.py
 
 
TaskB_Summarization_FLAN_T5_XXL_Inference.py
TaskB_Summarization_FLAN_T5_XXL_Inference.py
 
 
TaskB_Summarization_Inference.py
TaskB_Summarization_Inference.py
 
 
config.py
config.py
 
 
ds_config_zero0.json
ds_config_zero0.json
 
 
ds_config_zero2.json
ds_config_zero2.json
 
 
ds_config_zero3.json
ds_config_zero3.json
 
 
losses.py
losses.py
 
 
requirements.txt
requirements.txt
 
 
taskA_SuryaKiran_run1_mediqaSum.csv
taskA_SuryaKiran_run1_mediqaSum.csv
 
 
taskA_and_B_train_valid_test_split.json
taskA_and_B_train_valid_test_split.json
 
 
taskB_SuryaKiran_run1_mediqaSum.csv
taskB_SuryaKiran_run1_mediqaSum.csv
 
 
taskB_SuryaKiran_run2_mediqaSum.csv
taskB_SuryaKiran_run2_mediqaSum.csv
 
 
taskB_SuryaKiran_run3_mediqaSum.csv
taskB_SuryaKiran_run3_mediqaSum.csv
 
 
taskC_train_valid_test.json
taskC_train_valid_test.json
 
 
transformer_classifier.py
transformer_classifier.py
 
 

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mediqa-chat

For Subtask A - Dialogue2Topic Classification, execute the following steps -

  1. cd TaskA
  2. ./install.sh
  3. ./activate.sh
  4. ./decode_taskA_run1.sh <filepath>

For Subtask B - Dialogue2Note Summarization, execute the following steps -

  1. cd TaskB
  2. ./install.sh
  3. ./activate.sh
  4. ./decode_taskB_run1.sh <filepath>
  5. ./decode_taskB_run2.sh <filepath>
  6. ./decode_taskB_run3.sh <filepath>

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