This repository contains various analysis scripts for HyPhy -- a molecular evolutionary analysis platform. Unless otherwise stated in directory - specific README file, all analyses assume the availability of the HyPhy develop build. General steps for obtaining one on Linux and OS X systems and running an analysis-file, assuming you have
- C/C++ toolchains, like GCC or Clang
- CMake
is as follows
git clone https://github.com/veg/hyphy.git hyphy-develop
cd hyphy-develop
git checkout develop
cmake ./
make -j MP
./HYPHYMP analysis-file --help
Specific analysis directories have more specific analysis options and examples.