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1. ProteoformSuite ProteoformSuite Public

   Construction, quantification, and visualization of proteoform families

   C# 14 21

2. MetaMorpheus MetaMorpheus Public

   Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

   C# 110 51

3. mzLib mzLib Public

   Library for mass spectrometry projects

   C# 28 42

4. FlashLFQ FlashLFQ Public

   Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics

   C# 25 16

5. Spritz Spritz Public

   Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data

   C# 7 10

6. MetaDrive MetaDrive Public

   C# 3