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Differing depth than coverage in IGV

Status: Open.

#38 In single-cell-genetics/cellSNP;

· robert-a-forsyth opened on Dec 16, 2025

Best Practice for Demultiplexing C57BL6/J Mixed snRNA-seq Samples Using CellSNP + Vireo?

Status: Open.

#37 In single-cell-genetics/cellSNP;

· AxisJu opened on Feb 19, 2025

Adapting cellSNP for gene-of-interest / indels / multiple scRNA-seq samples

Status: Open.

#36 In single-cell-genetics/cellSNP;

· ychenab opened on Jun 20, 2023

generating VCF for REGION_VCF from RNA-seq data

Status: Open.

#35 In single-cell-genetics/cellSNP;

· gebdu opened on Mar 24, 2023

AD in cells

Status: Open.

#19 In single-cell-genetics/cellSNP;

· penglbio opened on Nov 28, 2020

Some SNPs are not in gene

Status: Open.

#18 In single-cell-genetics/cellSNP;

· penglbio opened on Nov 24, 2020

Reference Genome

Status: Open.

#15 In single-cell-genetics/cellSNP;

· OldManTae opened on Jul 16, 2020

Running cellSNP on transcriptomic BAM from salmon alevin

Status: Open.

#14 In single-cell-genetics/cellSNP;

· lmweber opened on Jul 13, 2020

Run time estimation

Status: Open.

#9 In single-cell-genetics/cellSNP;

· PeteHaitch opened on Feb 3, 2020

No SNPs called in more than 1 barcodes

Status: Open.

#8 In single-cell-genetics/cellSNP;

· saisomesh2594 opened on Nov 20, 2019

Default nan-handling policy is a memory hog

Status: Open.

#5 In single-cell-genetics/cellSNP;

· ivanov-v-v opened on Jul 26, 2019

Optimisation suggestions

Status: Open.

#1 In single-cell-genetics/cellSNP;

· Shians opened on Mar 3, 2019