Fix/modification writing - #3

Merged

singjc merged 11 commits into

fix/modification_writing

Feb 19, 2026

Commits on Feb 19, 2026

fix: refactor N-terminal dash removal in peptide processing
singjc
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090adb8
feat: add UniMod database parser and mass-bracket re-annotation functionality
singjc
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e094e1f
feat: integrate UniMod database for peptide modification reannotation in TSV output
singjc
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24949d2
feat: add decoy tag support in TSV output and Parquet writer initialization
singjc
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ef798ef
add: unimod xml database
singjc
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735271d
fix: update parameter handling to allow defaults when no config file is provided
singjc
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f0c3f35
feat: enhance UniMod integration with custom XML support and additional parameters
singjc
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95adc57
feat: add UniMod reannotation options and custom XML path to settings
singjc
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65886b1
fix: update Rust base image version to 1.88-slim in Dockerfile
singjc
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52e96e4
refactor: streamline fine-tune configuration handling and remove unused namespace stripping
singjc
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dd72385
feat: add peptide offset handling for globally unique IDs in TSV output
singjc
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9e1d634