Enhance peak mapping, FFT alignment, and improve documentation - #12

Merged

singjc merged 14 commits into

May 7, 2026

Commits on May 7, 2026

feat: update create_fft_dtw_rt_mapping to use DTW path for alignment and improve documentation
singjc
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fbb1a26
feat: add peak mapping candidate inspection and flattening functions
singjc
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fbaff57
feat: add methods for fetching precursors and processing peak mappings in Runner
singjc
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debf00b
feat: refactor from_arguments to use from_config_path for loading parameters and validation
singjc
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24423c9
add: debug cli tool
singjc
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0884172
feat: update build process to include arycal-debug-alignment binary and upload to release
singjc
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705a84d
feat: enhance peak mapping functionality and improve transition filtering in alignment
singjc
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88fa413
Refactor FFT cross-correlation in arycal
singjc
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18f3c3c
refactor: improve code readability and consistency in alignment modules
singjc
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f4ade09
Implement stratified shuffling for peak tuples and enhance decoy peak generation methods
singjc
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e0d036e
Merge branch 'master' into debugging
singjc
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db7918d
refactor: remove unused imports from main.rs
singjc
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9e59001
refactor: remove unused rlimit import from main.rs
singjc
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8566f6a
refactor: update thread handling to use map and unwrap_or for safer defaults
singjc
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8cfbc74