Issues

• add-study preview: no warning for studies that mix metagenome and metatranscriptome runs

  seandavi/nextflow_telemetry#294 · Filter by author seandavi opened on Oct 16, 2026

• add-study preview: amplicon warning fires on WGS studies with PCR library selection

  seandavi/nextflow_telemetry#293 · Filter by author seandavi opened on Oct 16, 2026

• Zenodo deposit strategy at corpus scale (milestones, what to include)

  discussion
  seandavi/nextflow_telemetry#292 · Filter by author seandavi opened on Oct 16, 2026

• Apply to AWS Open Data Sponsorship Program for cmgd releases

  discussion
  seandavi/nextflow_telemetry#290 · Filter by author seandavi opened on Oct 16, 2026

• Metadata store follow-ups from first release (cmgd_mpa4.2-2.3.0 / 2026-10-16)

  seandavi/nextflow_telemetry#288 · Filter by author seandavi opened on Oct 16, 2026

• Onboarding post-MVP: later phases L1-L8 (priority, bulk Olm selection, re-ingest, ...)

  seandavi/nextflow_telemetry#272 · Filter by author seandavi opened on Oct 16, 2026

• Onboarding MVP Phase 5: Zenodo + Hugging Face mirrors and reviewer-agent acceptance

  seandavi/nextflow_telemetry#271 · Filter by author seandavi opened on Oct 16, 2026
  1

• Onboarding MVP Phase 4: stage and release with metadata and provenance

  seandavi/nextflow_telemetry#270 · Filter by author seandavi opened on Oct 16, 2026
  1

• Onboarding MVP Phase 3: add-study path on v2 with cost estimates; run the 470-sample cohort

  seandavi/nextflow_telemetry#269 · Filter by author seandavi opened on Oct 16, 2026
  2

• Onboarding MVP Phase 2: cMD source, xref, harmonized view, cMD vs Olm comparison

  seandavi/nextflow_telemetry#268 · Filter by author seandavi opened on Oct 16, 2026
  1

• Epic: sample onboarding, multi-source metadata, and publication (MVP)

  seandavi/nextflow_telemetry#266 · Filter by author seandavi opened on Oct 16, 2026
  2

• Watchdog tests fail outside the deploy host; no test CI

  agent-ready
  seandavi/nextflow_telemetry#265 · Filter by author seandavi opened on Oct 15, 2026

• cmgd_mpa4.2 2.3.0 — fleet health

  healthstatus:attention
  seandavi/nextflow_telemetry#256 · Filter by author seandavi opened on Oct 10, 2026
  4

• Daemons claimed nothing for ~30h: stale nf-client install doesn't split comma workflow_id

  bug
  seandavi/nextflow_telemetry#249 · Filter by author seandavi opened on Oct 10, 2026

• Onboard PSC Bridges-2 (disk-limited) as a third cluster

  enhancement
  seandavi/nextflow_telemetry#244 · Filter by author seandavi opened on Oct 8, 2026

• 2.3.0 corpus run: readiness tracker (cmgd_mpa4.2, MetaPhlAn 4.2.6 / vJan26)

  enhancement
  seandavi/nextflow_telemetry#238 · Filter by author seandavi opened on Oct 8, 2026
  3

• Spike: MetaPhlAn + marker_abundance at cMD scale as a public DuckLake on R2

  enhancement
  seandavi/nextflow_telemetry#216 · Filter by author seandavi opened on Oct 8, 2026
  1

• Daemon rows: started_at never updates on restart; old login-node rows linger; no shutdown signal

  seandavi/nextflow_telemetry#209 · Filter by author seandavi opened on Oct 8, 2026

• Phase 3: metadata phase 1 — studies view in users' terms

  enhancement
  seandavi/nextflow_telemetry#197 · Filter by author seandavi opened on Oct 7, 2026
  1

• Phase 2: re-register the cMD corpus, pipeline 2.3.0, retire v1 API

  enhancement
  seandavi/nextflow_telemetry#196 · Filter by author seandavi opened on Oct 7, 2026

• Phase 1: readset ids and the Postgres catalog seam

  enhancement
  seandavi/nextflow_telemetry#195 · Filter by author seandavi opened on Oct 7, 2026

• Phase 0: land and harden v2, repoint everything off v1

  enhancement
  seandavi/nextflow_telemetry#194 · Filter by author seandavi opened on Oct 7, 2026
  4

• Plan: v2 cutover, catalog split, metadata phase 1

  enhancement
  seandavi/nextflow_telemetry#193 · Filter by author seandavi opened on Oct 7, 2026
  2

• [add-study] VilletteR_2025

  seandavi/nextflow_telemetry#189 · Filter by author lwaldron opened on Oct 4, 2026
  1

• [add-study] BoktorJC_2023

  seandavi/nextflow_telemetry#185 · Filter by author lwaldron opened on Oct 4, 2026
  1