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VCF reader support for multiallelic variants - #204

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VCF reader support for multiallelic variants#204
bgorissen wants to merge 1 commit into
saigegit:mainfrom
bgorissen:main

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When encountering a multiallelic variant, the VCF reader class displayed a warning that the variant would be skipped. However, the variant wasn't skipped but was processed with possibly incorrect dosage. This PR adds support for multiallelic variants by pooling all alternate alleles.

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