Manuscript Architect

Turns the artifacts a research effort already produced into a submission-ready, bioRxiv-style preprint.

A specialist agent profile and its companion skills for Claude Science. Turns a completed drug-program dossier and its artifacts into a bioRxiv-style preprint, runs it through two rounds of synthetic peer review with editor support, and produces four bundled deliverables (executive summary, manuscript + supplements, peer-review report, lay abstract).

What's in this repository

agent/
  profile.json        # picker metadata (name, description, access)
  system_prompt.md    # the agent's identity / opening system prompt
skills/               # 2 skill(s), each with SKILL.md (+ kernel.py helpers)
install.py            # one-shot, idempotent installer

Skills bundled

• agentic-campaign-manuscript
• synthetic-peer-review

Install it in Claude Science

Easiest — paste one prompt to your Claude Science agent

Please install the Manuscript Architect from this GitHub repo: https://github.com/ruthannepai-tech/manuscript-architect Clone or download it, then run install.py from the repo root in the repl tool with exec(open("install.py").read()). It will create and publish the skills and create the MANUSCRIPT_ARCHITECT agent profile with full access. Then create its environment and offer to switch me to it.

When it finishes, Manuscript Architect appears in your agent picker.

One command — if you already have the repo

From the repo root, in the Claude Science repl tool:

exec(open("install.py").read())

install.py publishes every skill under skills/ and creates the MANUSCRIPT_ARCHITECT agent profile with full catalog + connector access. It is idempotent — safe to re-run; it updates in place. It finishes by printing the optional environment setup and the switch command:

manage_environments(mode='create', name='manuscript-architect',
    packages=['requests'], python_version='3.13')
host.agents.switch('MANUSCRIPT_ARCHITECT')

Manual

The SKILL.md / kernel.py files and agent/ files are plain text and fully define everything; create each skill and an unrestricted profile named MANUSCRIPT_ARCHITECT by hand if you prefer.

A note on shared skills

Some skills here are shared with other agents I've published. They're bundled in each repo that needs them so every repo installs standalone. If you improve one of these, the same change may be worth applying wherever it appears:

• agentic-campaign-manuscript — also used by other agents in this collection
• synthetic-peer-review — also used by other agents in this collection

License

MIT — see LICENSE.