Paper: squidiff: Predicting cellular development and responses to perturbations using a diffusion model: https://www.nature.com/articles/s41592-025-02877-y link to paper GitHub: https://github.com/siyuh/Squidiff
Additional Dataset Taken from: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118068
- Data Preprocessing: build_train_h5ad.py
- Training: diff_new_data_training.sh
- Metrics: loss_plot.pdf
- Analaysis/Figures: mouse_natal_differentiation.ipynb