tetrex_analysis

Experiments and Analyses done for publication of TetRex

Contents

Variable k Analysis

1. runtimes was done with the cache (k5 regex 13 is slow) and has no complexity info
2. runtimes_and_complex was still done with cache but also contains complexity, index query count, and cache hit count
3. runtimes_no_cache was run without the cache (duh) and also has complexity info and index counts
4. runtimes_and_info was run without cache and also tracks complexity, index queries, pruneings, absorptions, and max pileups

Swissprot Benchmark Data data/RESULTS/all_sprot_times.tsv contains the 116 RegEx used for benchmarking as well as associated runtimes and other info