Retuve ChRIS Plugin

Using:

• https://github.com/radoss-org/retuve
• https://chrisproject.org/

Setup

We recommend using MiniChRIS to run ChRIS.

Plugin Building

The Docker image is automatically built and published to GitHub Container Registry via GitHub Actions when code is pushed to the main branch or when tags are created.

Manual Building (if needed)

sudo docker build -t ghcr.io/radoss-org/retuve-chris-plugin:latest .
sudo docker push ghcr.io/radoss-org/retuve-chris-plugin:latest

Pulling the Image

sudo docker pull ghcr.io/radoss-org/retuve-chris-plugin:latest

Plugin Upload

curl -u "chris:chris1234" http://localhost:8000/chris-admin/api/v1/ \
    -H 'Accept: application/json' \
    -F fname=@description.json \
    -F compute_names=host

Required Pipeline

This will be changed in the future to not require the unstacking of folders.

Plugin Testing

sudo docker run --rm \
  -v $PWD/retuve-data/default/uploaded:/incoming \
  -v $PWD/retuve-data/default/savedir:/outgoing \
  --user 1001 \
  ghcr.io/radoss-org/retuve-chris-plugin:latest \
  retuve_chris_plugin /incoming /outgoing

uv pip install --no-deps .
dotenv run -- retuve_chris_plugin retuve-data/default/uploaded retuve-data/default/savedir

Suitable files for testing purposes can be found here: https://github.com/radoss-org/radoss-creative-commons/tree/main/dicoms/ultrasound

sudo docker run --rm ghcr.io/radoss-org/retuve-chris-plugin:latest chris_plugin_info -d ghcr.io/radoss-org/retuve-chris-plugin:latest > description.json

Useful Resources

• https://github.com/FNNDSC/python-chrisapp-template